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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36211649_36213186_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36211649 - 36213186
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCATC
5'SS Class:
major
3'SS Sequence:
TTAACACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATGTTTTTAACA
Flanking Amino Acid:
PCTPEDDLEEGMAKEETELR
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
70.7
39.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.4
0.53
1
63.2
42.8
Minor 5ss
50.5
0.02
2.4
69.4
41.3
Minor BPS
75.1
0.78
1.1
76.87
34.2

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696