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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36214984_36216846_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36214984 - 36216846
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTCACCTGCACT
Flanking Amino Acid:
LEKALAEQGQDMKWIEEKQA
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
65.9
39.9
Major BPS
76.8
0.67
1
66
40.9
Major PPT
80.1
0.68
1
79.2
38.4
Minor 5ss
31.1
-2.2
3.3
41.5
45.2
Minor BPS
55.7
0.26
2
77.64
44.4

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696