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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36216910_36217254_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
36216910 - 36217254
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCCAAT
5'SS Class:
weak_major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
ATTGCTTTATTT
Flanking Amino Acid:
YRRNQELVEKIKQMEAEEAR
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
66.6
40.4
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
47.2
-0.3
2.6
65.5
45.8
Minor BPS
61.2
0.43
1.7
77.64
39.7

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696