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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36218466_36218554_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36218466 - 36218554
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGGAT
5'SS Class:
major
3'SS Sequence:
GCTCTCTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGTTTTCCATT
Flanking Amino Acid:
QVYCEAEGVTDIVVADLMKK
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
67.1
38.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
69.4
0.44
1
69.3
36.9
Minor 5ss
33.1
-1.9
3.7
51.9
46
Minor BPS
48.5
-0
1.9
70.83
41.3

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696