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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36220333_36220821_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36220333 - 36220821
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
AGGCCTTTACCT
Flanking Amino Acid:
ARTVLTLAEKWLQQIEVTES
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
73.3
0.52
1
68.1
42.3
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
55.2
0.24
1.6
68.42
42.4

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696