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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36220891_36220988_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36220891 - 36220988
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAAA
5'SS Class:
major
3'SS Sequence:
CCTTGTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ACTGACTTAATC
Flanking Amino Acid:
QKMLDLENEKELFSKQKGYL
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
66
41.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
68.8
0.42
0.9
60.8
40.2
Minor 5ss
36
-1.6
3.3
48.2
47.5
Minor BPS
59.6
0.28
1.6
65.37
40.6

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442
ENSAPLT00000003403
36180976 - 36225671
44696