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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36221067_36223744_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36221067 - 36223744
Intron Length:
2678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTATAT
U12 Branch Point Sequence:
TTGTTTTTGATT
Flanking Amino Acid:
RKQSLDQAHKQILELEAMLY
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
66.9
0.42
1.1
64.7
41.3
Major PPT
73
0.52
1
74.6
40
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
70.3
0.72
1.1
81.5
34.7

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003403
36180976 - 36225671
44696
ENSAPLT00000045712
36180976 - 36224557
43582
ENSAPLT00000021036
36180976 - 36226417
45442