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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36224375_36225620_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36224375 - 36225620
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTCTCTTCCATT
Flanking Amino Acid:
KRQIKELEEKFLFLFLFFSL
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
65
0.37
1.3
76.1
38
Major PPT
82.6
0.73
0.7
79.8
25.5
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
52.8
0.17
2
75.4
42.3

Associated Gene:

Gene:
JAKMIP3
Ensembl Gene ID:
ENSAPLG00000003318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003403
36180976 - 36225671
44696