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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36227488_36239739_F

Intron Information:

Intron Rank:
132445
Intron Class:
major
Intron Phase:
Intron Coordinates:
36227488 - 36239739
Intron Length:
12252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTAGTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.6
0.8
0.7
81.1
30.6
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
58.1
0.33
2.2
80.62
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021165
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039318
36226438 - 36240335
13898