About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36242817_36245203_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36242817 - 36245203
Intron Length:
2387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CAATCTTGAATT
Flanking Amino Acid:
TGEPPDGCRQSDQLLIKGGK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.54
0.9
68
38.8
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
61
0.42
1.4
70.77
40.4

Associated Gene:

Gene:
DPYSL4
Ensembl Gene ID:
ENSAPLG00000003668
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018373
36242513 - 36256948
14436