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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36253216_36254104_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36253216 - 36254104
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACTAT
5'SS Class:
major
3'SS Sequence:
GTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATGTACTTAACA
Flanking Amino Acid:
KIISAKTHNLNVEYNIFEGT
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70
36.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
91.7
0.94
0.7
84.6
36
Minor 5ss
45
-0.5
3
60.9
46.1
Minor BPS
74.2
0.76
1.4
79.08
36.9

Associated Gene:

Gene:
DPYSL4
Ensembl Gene ID:
ENSAPLG00000003668
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018373
36242513 - 36256948
14436
ENSAPLT00000003804
36242444 - 36256948
14505