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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36265759_36265918_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36265759 - 36265918
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CTGTGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
CACAGCTAACCC
Flanking Amino Acid:
KRVEPGFVPNKGRLHCDPTF
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
69
0.43
0.9
62.1
34.8
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
39
-0.8
2.2
43.28
44.3

Associated Gene:

Gene:
STK32C
Ensembl Gene ID:
ENSAPLG00000004989
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005167
36263867 - 36346314
82448