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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36267799_36267897_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36267799 - 36267897
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
GTGTTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACCT
Flanking Amino Acid:
IMAYELLRGWRPYDIHSNNP
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
55.7
44.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.6
0.55
0.9
66.2
40.8
Minor 5ss
35.2
-1.7
3.5
40.6
46
Minor BPS
59.1
0.37
1.9
79.4
43

Associated Gene:

Gene:
STK32C
Ensembl Gene ID:
ENSAPLG00000004989
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005167
36263867 - 36346314
82448