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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36268550_36270838_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36268550 - 36270838
Intron Length:
2289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CCTTCTTAAACT
Flanking Amino Acid:
KPDNILLDEQGHAHLTDFNI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.2
0.5
1.1
76
37
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
66.1
0.58
1.7
78.9
44

Associated Gene:

Gene:
STK32C
Ensembl Gene ID:
ENSAPLG00000004989
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005167
36263867 - 36346314
82448