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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36271536_36274133_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36271536 - 36274133
Intron Length:
2598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAC
U12 Branch Point Sequence:
GCTCGCTCAGCA
Flanking Amino Acid:
EIEHVFLVNLWYSFQDEEDM
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71
35.7
Major BPS
46.4
-0.2
1.4
53.6
41.6
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
43.1
-0.8
3
55.7
43.3
Minor BPS
43.5
-0.4
2.1
54.01
44.1

Associated Gene:

Gene:
STK32C
Ensembl Gene ID:
ENSAPLG00000004989
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005167
36263867 - 36346314
82448