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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36345627_36346157_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36345627 - 36346157
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCAC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CAGGCCTTAACC
Flanking Amino Acid:
GVTFSTTGSPGPQASGKHSG
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
65
41.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
46.1
-0.4
2.6
61.5
43.4
Minor BPS
67.4
0.53
1.5
67.17
44.4

Associated Gene:

Gene:
STK32C
Ensembl Gene ID:
ENSAPLG00000004989
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005167
36263867 - 36346314
82448