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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36347127_36347433_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36347127 - 36347433
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTTTCTCTATT
Flanking Amino Acid:
EEIYKLPDVKHFHLEGNAIS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
81.8
0.72
0.8
82.9
27.3
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
61
0.43
1.8
83.71
37.3

Associated Gene:

Gene:
LRRC27
Ensembl Gene ID:
ENSAPLG00000023192
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017856
36345718 - 36372150
26433