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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36361788_36363347_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36361788 - 36363347
Intron Length:
1560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTAAG
5'SS Class:
major
3'SS Sequence:
CACATTTTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTAACA
Flanking Amino Acid:
ELYPEPAGLCRRMSRQRNKF
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
74
38.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
58.6
0.19
1.1
59.7
39.3
Minor 5ss
35.2
-1.7
2.7
41.5
45.1
Minor BPS
60.9
0.34
1.8
72.29
39.1

Associated Gene:

Gene:
LRRC27
Ensembl Gene ID:
ENSAPLG00000023192
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017856
36345718 - 36372150
26433