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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36363489_36364392_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36363489 - 36364392
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGTAAATTAACT
Flanking Amino Acid:
EEQALFKQRKNNKEMRQDSR
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
93.8
19.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
83.5
0.75
0.8
81
36.2
Minor 5ss
33.1
-1.9
4
51.7
39.1
Minor BPS
60.2
0.4
1.9
80.55
40.1

Associated Gene:

Gene:
LRRC27
Ensembl Gene ID:
ENSAPLG00000023192
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017856
36345718 - 36372150
26433