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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36364487_36368023_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36364487 - 36368023
Intron Length:
3537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
FRFSPPNAHMMPQTASYGTD
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79.8
0.67
0.8
74.8
34.7
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
LRRC27
Ensembl Gene ID:
ENSAPLG00000023192
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017856
36345718 - 36372150
26433