About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36368158_36369868_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36368158 - 36369868
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCATGTTTACTT
Flanking Amino Acid:
GLLKVKDETTRSPRGKKMEQ
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
78.6
0.71
1
78.6
31
Major PPT
67.5
0.4
0.9
66.2
39.6
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
49.1
0.01
2
67.65
44.2

Associated Gene:

Gene:
LRRC27
Ensembl Gene ID:
ENSAPLG00000023192
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017856
36345718 - 36372150
26433