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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36369981_36372024_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
36369981 - 36372024
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TTTTAAACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
74
36.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.52
0.9
64.1
41.4
Minor 5ss
38.6
-1.3
3
48.9
41.6
Minor BPS
70.6
0.62
1.3
75.99
33.7

Associated Gene:

Gene:
PWWP2B
Ensembl Gene ID:
ENSAPLG00000005281
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005450
36369869 - 36387894
18026
Gene:
LRRC27
Ensembl Gene ID:
ENSAPLG00000023192
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017856
36345718 - 36372150
26433