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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3640771_3642554_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3640771 - 3642554

Intron Length:

1784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGCC

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATCAAT

U12 Branch Point Sequence:

GCATCAATAGCG

Flanking Amino Acid:

QTSEHIKSEQGNEYSLPALT

Intron Amino Acid Position:

296

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.9

33.4

Major BPS

56.8

0.17

1.3

66.4

36.8

Major PPT

79.8

0.67

0.7

72.4

32.3

Minor 5ss

-2.9

3.3

32.7

42.5

Minor BPS

-0.6

2.1

47.67

44.6

Associated Gene:

Gene:

PAX2

Ensembl Gene ID:

ENSAPLG00000014579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019177

3571327 - 3666454

95128

ENSAPLT00000015263

3571711 - 3666454

94744