Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3642682_3654390_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3642682 - 3654390

Intron Length:

11709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGCTGC

5'SS Class:

major

3'SS Sequence:

TACCCTACCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTCCAT

U12 Branch Point Sequence:

CATCCCTTACCC

Flanking Amino Acid:

SGPQTYPVVTENLSSPLSIK

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

64.4

42.8

Major BPS

62.1

0.3

1.4

72.5

43.5

Major PPT

68.5

0.42

0.9

61.7

33.2

Minor 5ss

44.7

-0.6

2.9

59.8

Minor BPS

62.5

0.37

1.7

69.05

42.2

Associated Gene:

Gene:

PAX2

Ensembl Gene ID:

ENSAPLG00000014579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019177

3571327 - 3666454

95128

ENSAPLT00000015263

3571711 - 3666454

94744