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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36452706_36453659_R

Intron Information:

Intron Rank:
153584
Intron Class:
major
Intron Phase:
Intron Coordinates:
36452706 - 36453659
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
CCAGCAATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
60.3
0.26
1
65.5
28
Major PPT
87.5
0.84
0.6
85.4
21.9
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
45.5
-0.3
2
53.13
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030105
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033932
36451946 - 36454016
2071