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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36491812_36566419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36491812 - 36566419
Intron Length:
74608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
CKRLRCLRSLPENLQKNWLR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
37.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
32
-2.1
3.3
38.4
41.8
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045078
36491632 - 36738040
246409