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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36510947_36566419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36510947 - 36566419
Intron Length:
55473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTATTT
Flanking Amino Acid:
TGSSGRVPCRPENLQKNWLR
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
65.6
41.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
26.7
-2.7
3.3
30.2
43.3
Minor BPS
70
0.7
1.5
84.24
36.8

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018241
36510150 - 36738040
227891