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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3654601_3658265_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3654601 - 3658265

Intron Length:

3665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCGGC

5'SS Class:

major

3'SS Sequence:

TTTCCCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

CTGTCCTGATTC

Flanking Amino Acid:

GQSSSQPLIAGRDMASTTLP

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.2

61.5

44.8

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

90.4

0.91

0.6

88.5

20.9

Minor 5ss

42.2

-0.9

3.3

59.3

45.5

Minor BPS

52.9

0.07

1.8

62.8

43.2

Associated Gene:

Gene:

PAX2

Ensembl Gene ID:

ENSAPLG00000014579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019177

3571327 - 3666454

95128

ENSAPLT00000015263

3571711 - 3666454

94744