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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36577571_36579517_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36577571 - 36579517
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATATTTTCAATC
Flanking Amino Acid:
ASMSHVDKFVKELLSSDAMK
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.2
0.7
0.8
73.5
37.1
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
58
0.23
1.4
65.26
34.3

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045078
36491632 - 36738040
246409
ENSAPLT00000018241
36510150 - 36738040
227891
ENSAPLT00000005509
36534684 - 36738040
203357