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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36634353_36640358_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36634353 - 36640358
Intron Length:
6006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTATTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTGTTTTATAT
Flanking Amino Acid:
LKNIYQFDFKAKKYKKVTGK
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74
0.54
0.8
66.5
39.3
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
54.6
0.22
1.8
76.11
41

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045078
36491632 - 36738040
246409
ENSAPLT00000018241
36510150 - 36738040
227891
ENSAPLT00000005509
36534684 - 36738040
203357