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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3664028_3665393_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3664028 - 3665393

Intron Length:

1366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TGTTAACTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

CCTGTGTTAACT

Flanking Amino Acid:

AWRFSNPALLSSPYYYSATS

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.7

30.1

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

0.65

0.9

74.7

39.9

Minor 5ss

33.3

-1.9

2.7

38.5

32.5

Minor BPS

51.2

0.12

2.2

70.32

47.1

Associated Gene:

Gene:

PAX2

Ensembl Gene ID:

ENSAPLG00000014579

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015263

3571711 - 3666454

94744

ENSAPLT00000019177

3571327 - 3666454

95128