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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36658496_36675960_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36658496 - 36675960
Intron Length:
17465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
RHKALGYVLDRIIDQRFEKV
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.8
0.94
0.7
84.8
35.4
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018241
36510150 - 36738040
227891
ENSAPLT00000005509
36534684 - 36738040
203357
ENSAPLT00000045078
36491632 - 36738040
246409