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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36676046_36708106_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36676046 - 36708106
Intron Length:
32061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TGTTTTTTATTA
Flanking Amino Acid:
FRLDAKAVVETLCAKATMQT
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
81.1
0.7
0.9
82.3
34.1
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
62
0.37
1.5
71.06
35.7

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045078
36491632 - 36738040
246409
ENSAPLT00000018241
36510150 - 36738040
227891
ENSAPLT00000005509
36534684 - 36738040
203357