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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3670390_3672046_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3670390 - 3672046
Intron Length:
1657

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAGGAAGG
5'SS Class:
major
3'SS Sequence:
AAACTGGCTGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGAGAT
U12 Branch Point Sequence:
TCTGCCATGAGA
Flanking Amino Acid:
GWVQNGGKLANQRKSLCSLV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
62.3
42
Major BPS
55.2
0.13
1.2
52.5
43.3
Major PPT
45.3
-0.2
1.7
43.4
42.3
Minor 5ss
22.9
-3.1
3.9
30.8
36.7
Minor BPS
48.2
-0.1
2
62.99
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028928
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044048
3670286 - 3676530
6245