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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36722051_36737480_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36722051 - 36737480
Intron Length:
15430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
GATTTGTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
AGTTTCTGACTT
Flanking Amino Acid:
LYELDISFPPSYPYSEDSSQ
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
79.8
0.67
0.9
73.2
41.7
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
53.3
0.18
1.7
71.56
39.6

Associated Gene:

Gene:
INPP5A
Ensembl Gene ID:
ENSAPLG00000005286
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018241
36510150 - 36738040
227891
ENSAPLT00000005509
36534684 - 36738040
203357
ENSAPLT00000045078
36491632 - 36738040
246409