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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36780946_36781568_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36780946 - 36781568
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGTGTTTTATAC
Flanking Amino Acid:
SKIGTTCEPNWYSGAYTDHT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65
40.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.2
0.63
1
72.9
41.4
Minor 5ss
31.2
-2.2
3.2
36.8
41.4
Minor BPS
48.1
-0.1
1.7
59.38
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005542
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025229
36778841 - 36783223
4383
ENSAPLT00000023634
36778841 - 36787010
8170
ENSAPLT00000005738
36778841 - 36783865
5025