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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36781687_36782654_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36781687 - 36782654
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTCTTTAAAG
Flanking Amino Acid:
YGKLMQKLRKVSDTQCRLGT
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
80.8
0.69
1
82.1
27.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
78.4
0.75
1.3
80.63
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005542
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005738
36778841 - 36783865
5025
ENSAPLT00000025229
36778841 - 36783223
4383
ENSAPLT00000023634
36778841 - 36787010
8170