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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36782900_36783195_F

Intron Information:

Intron Rank:
4
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
36782900 - 36783195
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
GTCTATTTTCAAG|A
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTGTATGA
Flanking Amino Acid:
IIYVFMNKQVLLSHDISIL*
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.1
64.8
41.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70
0.45
1.1
67.4
42.6
Minor 5ss
80.7
1.03
2
91.5
26.7
Minor BPS
47.7
-0.1
2.4
70.42
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005542
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025229
36778841 - 36783223
4383