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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36849927_36851192_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36849927 - 36851192
Intron Length:
1266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATTTA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGCATTTAAGT
Flanking Amino Acid:
LGAVKTVGHTGSTVTLLMLC
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
77.4
33.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
42.7
-0.8
2.9
49.3
47
Minor BPS
55.1
0.24
1.8
74.11
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583