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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36851406_36852920_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36851406 - 36852920
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTACC
5'SS Class:
major
3'SS Sequence:
ACTAATTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGTTTCTTAATA
Flanking Amino Acid:
PESDLEWKAYSSWIDYLSRY
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
71.8
38
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.2
0.5
0.9
65.3
40.2
Minor 5ss
36
-1.6
2.9
47.2
41.1
Minor BPS
77.2
0.85
1.1
78.17
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583