About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36853055_36853593_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36853055 - 36853593
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTCTTTGTATCT
Flanking Amino Acid:
LAEIRFINAEATIHLLRLQG
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
74.2
36.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.3
0.73
0.9
73.5
41.7
Minor 5ss
39.7
-1.1
2.8
51.7
45.1
Minor BPS
49.1
0.01
2.2
74.38
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583