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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36853740_36855607_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36853740 - 36855607
Intron Length:
1868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATAATGTAACT
Flanking Amino Acid:
LFRRATKPKKTQKKKASITM
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
80
0.75
1
78.6
31
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
47.8
-0
2.1
69.42
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583