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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36855739_36856657_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36855739 - 36856657
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTTCTTTGATA
Flanking Amino Acid:
KHLKKENDKERIRLWANLAK
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
80.7
31.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.7
0.71
0.9
80.3
31.8
Minor 5ss
37.1
-1.5
2.6
47.1
41.2
Minor BPS
80.9
0.97
0.9
85.86
25.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583