About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36858628_36859906_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36858628 - 36859906
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTTACAT
Flanking Amino Acid:
EDQALMMIEQAKRGKEKNNV
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
74.3
36.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.6
0.6
0.9
73.3
36.2
Minor 5ss
40
-1.1
3.4
55.8
48.3
Minor BPS
58.7
0.35
1.9
82.06
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583