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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36860136_36861894_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36860136 - 36861894
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTTT
5'SS Class:
major
3'SS Sequence:
TTTTATTCCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCCATTTAACA
Flanking Amino Acid:
AVADVLEEIDSMLIFLRCQV
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.1
0.7
0.7
77.1
31.4
Minor 5ss
51.1
0.04
2.9
75.5
40.6
Minor BPS
58.8
0.27
1.6
65.36
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583