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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36867343_36871241_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36867343 - 36871241
Intron Length:
3899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATC
Flanking Amino Acid:
PDGEWRAELMINLLECLLDA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
86.1
24.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.2
0.63
0.9
71.2
38.9
Minor 5ss
46.2
-0.4
2.8
62.8
42
Minor BPS
71.1
0.64
1.4
77.61
31.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006027
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006267
36843307 - 36875889
32583