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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36910384_36913669_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
36910384 - 36913669
Intron Length:
3286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTATG
5'SS Class:
weak_major
3'SS Sequence:
TCTTTAACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CTTTCTTTAACT
Flanking Amino Acid:
PHAIAAISRFYILRHNQRLR
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
67.8
42.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
80.9
0.69
0.8
75
33.5
Minor 5ss
48.3
-0.1
2.5
69.5
41
Minor BPS
87.7
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
ALDH18A1
Ensembl Gene ID:
ENSAPLG00000006363
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039678
36910260 - 36938743
28484
ENSAPLT00000006593
36910260 - 36938743
28484