About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36916684_36916773_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36916684 - 36916773
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCTTTATCT
Flanking Amino Acid:
HSGQSQLKDMAIPVLEARAC
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
85.4
0.8
0.7
80.7
31.2
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
75.2
0.87
1.5
89.09
35.5

Associated Gene:

Gene:
ALDH18A1
Ensembl Gene ID:
ENSAPLG00000006363
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039678
36910260 - 36938743
28484
ENSAPLT00000006593
36910260 - 36938743
28484