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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_36937193_36937824_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36937193 - 36937824
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CTACCTTTACCT
Flanking Amino Acid:
RFSDGYRFGLGAEVGISTSR
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.6
37.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
82.4
0.73
0.9
76.6
37.7
Minor 5ss
34.4
-1.8
3.2
45.9
42.3
Minor BPS
59.6
0.38
1.7
73.91
43

Associated Gene:

Gene:
ALDH18A1
Ensembl Gene ID:
ENSAPLG00000006363
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006593
36910260 - 36938743
28484