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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3709270_3765022_R

Intron Information:

Intron Rank:
153646
Intron Class:
major
Intron Phase:
Intron Coordinates:
3709270 - 3765022
Intron Length:
55753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATTTCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
74.1
38.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.4
0.5
0.9
67.6
33.4
Minor 5ss
36
-1.6
2.7
37.8
40.1
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030153
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046541
3708961 - 3765273
56313